Bioconductor Packages

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

A Package for CLL Gene Expression Data

Methylation data of primary CLL samples in PACE project

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

CRC cell line dataset

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Diffuse large B-cell lymphoma expression data

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

Data employed in the vignette of the GSVA package

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

T cell line infections with HIV-1 LAI (BRU)

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Processed Harmonized TCGA Data of Five Selected Cancer Types

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

LINCS Knock-Out Data Package

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Reads from Two Lung Cancer Cell Lines

Data package for Multi-Omics Factor Analysis (MOFA)

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

expression and CGH data on breast cancer cell lines

expression and copy number data on clear cell renal carcinoma samples

Data package for phylogenetic profile analysis using PhyloProfile tool

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

An RRBS data set with 12 samples and 10,000 simulated DMRs

Standard regression functions in R enabled for parallel processing over large data-frames

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

RnaSeqSampleSizeData

Supporting datasets for SBGNview package