Bioconductor Packages

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Collection of Bulk RNA-Seq Experiments With Many Replicates

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009

M3Drop Example Data

Example ChIP-Seq data for the MMDiff package

Example {M}ouse {U}niversal {G}enotyping {A}rray data for genome reconstruction and quantitative trait locus mapping.

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Collection of Public DNA Methylation Sequencing Datasets

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Experimental Data for MutSeqR Examples

Data for NxtIRF

Supporting data for package OMICsPCA

Promoter Capture Hi-C data

D. melanogaster background for PWMEnrich

H. sapiens background for PWMEnrich

M. musculus background for PWMEnrich

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Datasets for the PepsNMR package

Programmatic access to ProteinGym datasets in R/Bioconductor

QDNAseq bin annotation for hg19

Bin annotation mm10

Data employed in the vignette of the QUBIC package

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

An RRBS data set with 12 samples and 10,000 simulated DMRs

RcisTarget motif databases for human (hg19) - Subset of 4.6k motifs

Companion data package for the ReactomeGSA package

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Collection of spatial omics datasets

Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.

Data for TCGA Workflow

Data for the TCGAbiolinksGUI package

Experiment data for the TENET package

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics

Visium spatial gene expression data by 10X Genomics