Bioconductor Packages

Interactive SummarizedExperiment Explorer

Streamlining the creation of initial states for starting an iSEE instance

iSEE for the Bioconductor ExperimentHub

iSEE extension for panels related to pathway analysis

Interactive visualisation for microbiome data

Interactive Differential Expression AnaLysis

igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)

TCGA Diagnostic Image Database Explorer

Changing genomic coordinate systems with rtracklayer::liftOver

Linear Models for Microarray and Omics Data

Tools for conducting enrichment analysis of MeSH

Mapping of Metabolite IDs from Different Sources

Dashboard for the interactive analysis and exploration of microbiome data

A data package containing annotation data for mouseCHRLOC

Preprocessing tools for oligonucleotide arrays

Vizualization tools for 'omics' datasets with R

Interactive Visualization of RNA-seq Data Using a Principal Components Approach

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

Demonstration Data from rGenomeTracks Package

A data package containing annotation data for ratCHRLOC

Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

A set of annotation maps for reactome

L1-regularization based methods for detection of differential splicing

Rotation based gene set analysis

Pretrained models for scAnnotatR package

Analysis of scDNA-seq data

scanMiR shiny application

Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts

Introduction to Bioconductor for Sequence Data

A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny

A Shiny App For Visualizing Nanostring GeoMx DSP Data

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Supervised Normalization of Microarrays

Speedy quality assurance via lasso labeling for LC-MS data

AnnotationData for Synaptome.DB package

Synamptosome Proteome Database

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization