Bioconductor Packages

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Genomic coordinates of CTCF binding sites, with orientation

A set of annotation maps describing the entire Disease Ontology

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

A set of annotation maps describing the entire Gene Ontology

A set of annotation maps describing the entire Human Disease Ontology

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

A set of annotation maps describing the entire Human Phenotype Ontology

Processed Harmonized TCGA Data of Five Selected Cancer Types

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Reproduce figures in IHW paper

Data package for JASPAR databases

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

LowMACAAnnotation

MIGSA vignette data

Data package for Multi-Omics Factor Analysis (MOFA)

A set of annotation maps describing the Mouse Phenotype Ontology

Data sets for the book 'Modern Statistics for Biology'

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Orthology mapping package

Probe-level Expression Change Averaging

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

An ExperimentHub package for accessing processed RLSuite data sets

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Integrating Multi-modal Single Cell Experiment datasets

Collection of spatial omics datasets

Visium spatial gene expression data by 10X Genomics

Transcriptome instability analysis

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

A harmonized data resource and software for enrichment analysis of microbial physiologies

ExperimentHub data for the cfTools package

Curated Metagenomic Data of the Human Microbiome