Bioconductor Packages

BioC Workflow about publishing a Bioc Workflow

Probe-level Expression Change Averaging

Transcriptome instability analysis

Using Bioconductor for Microarray Analysis

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

Core Utilities for Automatically Generated Reports

Automatic Generation of Differential Expression Analyses

Automatic Generation of Gene Set Enrichment Analyses

Automatic Generation of Functional Screen Analyses

Automatic Generation of Single-Cell Analyses

Decomposing Heterogeneous Cohorts using Omic Data Profiling

A plyranges and tximeta workflow

Global Test for Counts

Unknown annotation data (chip hguDKFZ31)

Unknown annotation data (chip hgubeta7)

Changing genomic coordinate systems with rtracklayer::liftOver

Linear Models for Microarray and Omics Data

Preprocessing tools for oligonucleotide arrays

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

L1-regularization based methods for detection of differential splicing

Rotation based gene set analysis

Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts

Introduction to Bioconductor for Sequence Data

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Supervised Normalization of Microarrays

systemPipeR: A Multipurpose Workflow Management System for Reproducible Data Analysis

Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays