Bioconductor Packages

Data for the EpiMix package

Tissue Specific Gene Expression Prediction Models Constructed From Paired DNA Methylation and RNA Counts

EpipwR.data: Reference data for EpipwR

Download datasets from EMBL-EBI Expression Atlas

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

all 90 hapmap CEU samples, 47K expression, 4mm SNP

A set of annotation maps describing the entire Gene Ontology

Gene Set Benchmark

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

A set of annotation maps describing the entire Human Disease Ontology

T cell line infections with HIV-1 LAI (BRU)

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Head and Neck Squamous Carcinoma scRNA-Seq dataset

A set of annotation maps describing the entire Human Phenotype Ontology

Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)

Data for the Harman package

Data for the HelloRanges tutorial vignette

HiBED

HiContacts companion data package

HiTIMED

Collection of Bulk RNA-Seq Experiments With Many Replicates

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

R interface to EBI HoloFood resource

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

Illumina microarray files (IDAT) for testing

Data package for JASPAR databases

Data package for JASPAR

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)