Bioconductor Packages

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Attribute-Weighted Aggregation Data

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Data and Files for the AssessORF Package

Illumina EPIC data on BeadSorted child saliva cells

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

Carbon Tetrachloride (CCl4) treated hepatocytes

Annotations for City of Hope CpG Island Analysis Pipeline

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

Genomic coordinates of CTCF binding sites, with orientation

Pre-processed data for use with the CellMapper package

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Chimp and human brain data package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Data Package for DMRcate

Example DNAm Data for DMRsegal

A set of annotation maps describing the entire Disease Ontology

Orchestrating Blood Radiation Transcriptomic Data

Supplementary data package for Dona et al. (2013) containing example images and tables

Test Files for Single-Cell Droplet Utilities

Data for the ELMER package

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

EpipwR.data: Reference data for EpipwR

Download datasets from EMBL-EBI Expression Atlas

CAGE data from FANTOM3 and FANTOM4 projects

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

A set of annotation maps describing the entire Gene Ontology

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package