Bioconductor Packages

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

A harmonized data resource and software for enrichment analysis of microbial physiologies

Connectivity Map (version 2) Data

CEU (N=60) genotypes from 1000 genomes pilot phase I

expression + genotype on 79 unrelated CEU individuals

ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort

ExperimentHub data for the cfTools package

resources for genetics of gene expression based on Cheung et al 2010

cn.mops - Mixture of Poissons for CNV detection in NGS data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Decomposing Heterogeneous Cohorts using Omic Data Profiling

Genomic coordinates of problematic genomic regions

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Genomic coordinates of problematic genomic regions

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Furrow Segmentation

Auxillary data for gage package

Input data for the geneplast package

Experimental data for showing functionalities of the genomation package

summarized experiment with expression data from GEUVADIS

an R package for visualization of tree and annotation data

Global Test for Counts

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

Unknown annotation data (chip hguDKFZ31)

Unknown annotation data (chip hgubeta7)

YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes