Bioconductor Packages

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Annotations for City of Hope CpG Island Analysis Pipeline

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

Orchestrating Blood Radiation Transcriptomic Data

Drug versus Disease Data

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data used in the examples and vignettes of the GWASTools package

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Processed Harmonized TCGA Data of Five Selected Cancer Types

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Reproduce figures in IHW paper

ITALICSData

Data package for JASPAR 2016

Disease Datasets from GEO

KEGG Disease Datasets from GEO

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

M3Drop Example Data

Experimental Data Package: MAQCsubset

Example ChIP-Seq data for the MMDiff package

Data package for Multi-Omics Factor Analysis (MOFA)

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

Data for the NCIgraph software package

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data required for getting the gene set scores with NetActivity package

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package