Bioconductor Packages

Gene expression enrichment in human brain regions

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

ADAM: Activity and Diversity Analysis Module

Activity and Diversity Analysis Module Graphical User Interface

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

EnsDbs for AnnotationHub

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

AnaLysis routines for ePigenomicS data

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Microbiome differential abudance and correlation analyses with bias correction

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Ancestry Specific Allele Frequency Estimation

ASCETIC

An R package for subset-based association analysis of heterogeneous traits and subtypes

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

Transcription Factor Enrichment Analysis for ATAC-seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

A Functional Approach To Impute Genetically Regulated Expression

Affymetrix Quality Assessment and Analysis Tool

Processing and Differential Expression Analysis of Agilent microRNA chips

Accessing AlphaMissense Data Resources in R

Expose the vrs_anvil_toolkit Python package via R

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Manipulation of SQLite-based annotations in Bioconductor

geneChip Analysis Package

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Gene Expression Atlas query and gene set enrichment package.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Predicting binding site consensus from ranked DNA sequences

Barcode Analysis using linear models

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Bayesian models for differential gene expression

BLMA: A package for bi-level meta-analysis

Model higher-order methylation profiles

R package associated to BREW3R

Tools for the Efficient Analysis of High-Resolution Genomics Data

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data