Bioconductor Packages

Averaged gene expression in human brain regions from Allen Brain Atlas

Gene expression enrichment in human brain regions

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

ADAM: Activity and Diversity Analysis Module

Adaptive Dropout Imputer (ADImpute)

Analysis of Big Data from aCGH Experiments using Parallel Computing and ff Objects

Agreement of Differential Expression Analysis

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

AnaLysis routines for ePigenomicS data

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Association Plots

Example dataset for normalization of Illumina 450k Methylation data

Adaptive Robust Regression normalization for Illumina methylation data

Ancestry Specific Allele Frequency Estimation

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

Analysis Tools for scATACseq Data with CoGAPS

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation Data

A Functional Approach To Impute Genetically Regulated Expression

Analyze and correct probe positional bias in microarray data due to RNA degradation

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Accessing AlphaMissense Data Resources in R

Example of Amplified Data

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Implementation of wave correction for arrays

Data and Files for the AssessORF Package

Gene Expression Atlas query and gene set enrichment package.

Bayesian Analysis of Chip-chip experiment

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

BEAT - BS-Seq Epimutation Analysis Toolkit

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2