Bioconductor Packages

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data

Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

Identifying Differential Effects in Tiling Microarray Data

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs