Bioconductor Packages

Averaged gene expression in human brain regions from Allen Brain Atlas

Gene expression enrichment in human brain regions

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

ADAM: Activity and Diversity Analysis Module

Activity and Diversity Analysis Module Graphical User Interface

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

EnsDbs for AnnotationHub

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

AnaLysis routines for ePigenomicS data

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Microbiome differential abudance and correlation analyses with bias correction

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Example dataset for normalization of Illumina 450k Methylation data

Ancestry Specific Allele Frequency Estimation

ASCETIC

An R package for subset-based association analysis of heterogeneous traits and subtypes

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

ATAC-seq Quality Control

Transcription Factor Enrichment Analysis for ATAC-seq

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation Data

A Functional Approach To Impute Genetically Regulated Expression

Affymetrix Quality Assessment and Analysis Tool

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Processing and Differential Expression Analysis of Agilent microRNA chips

Accessing AlphaMissense Data Resources in R

Example of Amplified Data

Expose the vrs_anvil_toolkit Python package via R

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Manipulation of SQLite-based annotations in Bioconductor

geneChip Analysis Package

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Data and Files for the AssessORF Package

Gene Expression Atlas query and gene set enrichment package.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data