yarn
Bioc currentYARN: Robust Multi-Condition RNA-Seq Preprocessing and Normalization
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
Expedite large RNA-Seq analyses using a combination of previously developed tools. YARN is meant to make it easier for the user in performing basic mis-annotation quality control, filtering, and condition-aware normalization. YARN leverages many Bioconductor tools and statistical techniques to account for the large heterogeneity and sparsity found in very large RNA-seq experiments.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
15 12 exported
Complexity
3.7 avg / 9 max
Call network
15 nodes / 9 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,456
Files
47
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
12
Internal functions
3
Testing & CI
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2016-11-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 88%
- Documented parameters
- 96%
- Return-value docs
- 100%
- References docs
- 12%
Topics
People
- Joseph N Paulson author maintainer
- Cho-Yi Chen author
- Maud Fagny author
- Kimberly Glass author
- Marieke Kuijjer author
- Camila Lopes-Ramos author
- John Platig author
- John Quackenbush author
- Abhijeet Sonawane author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("yarn")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-07, which the citation names so these numbers can be found later. More on citing and the projects behind them.