smoppix
Bioc currentAnalyze Single Molecule Spatial Omics Data Using the Probabilistic Index
Release Lineage
Entered 3.21 · Apr 16, 2025
Current · Requires R 4.6
Description
Test for univariate and bivariate spatial patterns in spatial omics data with single-molecule resolution. The tests implemented allow for analysis of nested designs and are automatically calibrated to different biological specimens. Tests for aggregation, colocalization, gradients and vicinity to cell edge or centroid are provided.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
87 26 exported
Complexity
5.8 avg / 35 max
Call network
87 nodes / 126 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,935
Files
132
Compiled share
5%
Has compiled src
Yes
Language breakdown
API
Exported functions
27
Internal functions
46
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.21
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
10%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2025-04-15
Latest release
2026-04-28
Avg cadence
189 days
Cold removal rate
–
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 83%
- Return-value docs
- 100%
- References docs
- 9%
Topics
People
- Stijn Hawinkel maintainer author