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simpleaffy

Bioc removed

Very simple high level analysis of Affymetrix data

v2.66.0 · GPL (>= 2)
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 1.4 · May 17, 2004

Removed after 3.12 · Oct 28, 2020

1.0 In 34 of 49 releases 3.23

Description

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures...

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Microarray
Software › Technology › Microarray › OneChannel
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Preprocessing
Software › AssayDomain › Transcription
Software › Infrastructure › DataImport
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › Annotation
Software › WorkflowStep › ReportWriting
Software › WorkflowStep › Visualization

Depended on by (5)

Bioconductor (5)

AffyExpress affyQCReport ArrayTools ELBOW yaqcaffy

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