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memes

Bioc current

motif matching, comparison, and de novo discovery using the MEME Suite

v1.20.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

A seamless interface to the MEME Suite family of tools for motif analysis. 'memes' provides data aware utilities for using GRanges objects as entrypoints to motif analysis, data structures for examining & editing motif lists, and novel data visualizations. 'memes' functions and data structures are amenable to both base R and tidyverse workflows.

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Topics

Software › Infrastructure › DataImport
Software › ResearchField › FunctionalGenomics
Software › BiologicalQuestion › GeneRegulation
Software › BiologicalQuestion › MotifAnnotation
Software › BiologicalQuestion › MotifDiscovery
Software › BiologicalQuestion › SequenceMatching
Software

Depended on by (2)

Bioconductor (2)

MotifPeeker postNet

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