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flowWorkspace

Bioc current

Infrastructure for representing and interacting with gated and ungated cytometry data sets.

v4.24.0 · software · AGPL-3.0-only
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.9 · Nov 1, 2011

Current · Requires R 4.6

1.0 In 30 of 49 releases 3.23

Description

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › FlowCytometry
Software › Infrastructure › DataImport
Software › WorkflowStep › Preprocessing
Software › Infrastructure › DataRepresentation

Depended on by (15)

Bioconductor (15)

CATALYST COMPASS CytoML flowClust flowCore flowGate FlowSOM flowStats ggcyto openCyto PeacoQC staRgate highthroughputassays ImmuneSpaceR QUALIFIER

People

Greg Finak