aCGH
Bioc currentClasses and functions for Array Comparative Genomic Hybridization data
Release Lineage
Entered 1.4 · May 17, 2004
Current · Requires R 4.6
Description
Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
96 0 exported
Complexity
7 avg / 54 max
Call network
96 nodes / 126 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
10,178
Files
55
Compiled share
3.3%
Has compiled src
Yes
Language breakdown
API
Exported functions
17
Internal functions
0
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
–
\dontrun example ratio
0%
Roxygen coverage
–
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
5%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.10
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
45
First release
2004-08-23
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
11
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Topics
Depended on by (5)
Bioconductor (5)
People
Peter Dimitrov