TnT
Bioc currentInteractive Visualization for Genomic Features
Release Lineage
Entered 3.6 · Oct 31, 2017
Current · Requires R 4.6
Description
A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
65 24 exported
Complexity
2.7 avg / 12 max
Call network
65 nodes / 73 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,514
Files
69
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
26
Internal functions
41
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.11
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.4
System requirements
–
C++ standard
–
License
AGPL-3
License flags
SPDX valid, OSI approved
History
Versions
18
First release
2017-11-09
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 87%
- Return-value docs
- 100%
- References docs
- 6%
Topics
People
- Jialin Ma maintainer author
- Toby Hocking author
- Miguel Pignatelli author
Cite
Cite this package
Start here. This is the citation for the package itself.
citation("TnT")Bioconductor packages have no CRAN DOI. The package landing page is https://bioconductor.org/packages/TnT.
BibTeX, derived from DESCRIPTION
@Manual{TnT,
title = {TnT: Interactive Visualization for Genomic Features},
author = {Ma, Jialin and Hocking, Toby and Pignatelli, Miguel},
year = {2026},
note = {R package version 1.34.0},
url = {https://bioconductor.org/packages/TnT}
}Derived from the package DESCRIPTION, not from a citation file the authors wrote. If they publish one later, prefer it.
This is the citation for the package. It is not a citation for the R Observatory.
Cite this page
Use this when the claim is about a measurement on this page.
BibTeX
@misc{robservatoryTnT,
author = {Balamuta, James Joseph},
title = {{R} {Observatory}: Metrics for {TnT} version 1.34.0},
year = {2026},
publisher = {HJJB, LLC},
url = {https://r-observatory.thecoatlessprofessor.com/bioc/TnT},
note = {Data set. Data release v2026-08-05}
}APA
Balamuta, J. J. (2026). R Observatory: Metrics for TnT version 1.34.0 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/bioc/TnTRIS
TY - DATA
AU - Balamuta, James Joseph
TI - R Observatory: Metrics for TnT version 1.34.0
PY - 2026
PB - HJJB, LLC
N1 - Data release v2026-08-05
UR - https://r-observatory.thecoatlessprofessor.com/bioc/TnT
ER - In prose
These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/bioc/TnT.Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.