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SPIAT

Bioc current

Spatial Image Analysis of Tissues

v1.14.0 · software · Artistic-2.0 + file LICENSE
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Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

SPIAT (**Sp**atial **I**mage **A**nalysis of **T**issues) is an R package with a suite of data processing, quality control, visualization and data analysis tools. SPIAT is compatible with data generated from single-cell spatial proteomics platforms (e.g. OPAL, CODEX, MIBI, cellprofiler). SPIAT reads spatial data in the form of X and Y coordinates of cells, marker intensities and cell phenotypes. SPIAT includes six analysis modules that allow visualization, calculation of cell colocalization, categorization of the immune microenvironment relative to tumor areas, analysis of cellular neighborhoods, and the quantification of spatial heterogeneity, providing a comprehensive toolkit for spatial data analysis.

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Topics

Software › ResearchField › BiomedicalInformatics
Software › ResearchField › CellBiology
Software › Technology › Spatial
Software › StatisticalMethod › Clustering
Software › Infrastructure › DataImport
Software › ResearchField › Immunology › ImmunoOncology
Software › WorkflowStep › QualityControl
Software › Technology › SingleCell
Software
Software › WorkflowStep › Visualization

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