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SBGNview

Bioc current

"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"

v1.26.0 · software · AGPL-3
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Release Lineage

Entered 3.10 · Oct 30, 2019

Current · Requires R 4.6

1.0 In 14 of 49 releases 3.23

Description

SBGNview is a tool set for pathway based data visalization, integration and analysis. SBGNview is similar and complementary to the widely used Pathview, with the following key features: 1. Pathway definition by the widely adopted Systems Biology Graphical Notation (SBGN); 2. Supports multiple major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP) and user defined pathways; 3. Covers 5,200 reference pathways and over 3,000 species by default; 4. Extensive graphics controls, including glyph and edge attributes, graph layout and sub-pathway highlight; 5. SBGN pathway data manipulation, processing, extraction and analysis.

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Topics

Software › BiologicalQuestion › GeneTarget
Software › WorkflowStep › Pathways
Software › StatisticalMethod › GraphAndNetwork
Software › WorkflowStep › Visualization
Software › BiologicalQuestion › GeneSetEnrichment
Software › BiologicalQuestion › DifferentialExpression
Software › AssayDomain › GeneExpression
Software › Technology › Microarray
Software › Technology › Sequencing › RNASeq
Software › ResearchField › Genetics
Software › ResearchField › Metabolomics
Software › ResearchField › Proteomics
Software › ResearchField › SystemsBiology
Software › Technology › Sequencing
Software › BiologicalQuestion › GeneTarget

People

Weijun Luo