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PROPS

Bioc current

PRObabilistic Pathway Score (PROPS)

v1.34.0 · software · GPL-2

Release Lineage

Entered 3.6 · Oct 31, 2017

Current · Requires R 4.6

1.0 In 18 of 49 releases 3.23

Description

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Test coverage

Line coverage

Expression

Tests / Examples

Functions

1 0 exported

Complexity

22 avg / 22 max

Call network

1 nodes / 0 edges

Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

Code

Structure

Lines of code

345

Files

14

Compiled share

0%

Has compiled src

No

Language breakdown

R 94 (27.2%)Docs 164 (47.5%)Vignettes 87 (25.2%)

API

Exported functions

0

Internal functions

0

Recent export changes

v3.6+1 pattern:^[[:alpha:]]+

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Roxygen coverage

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

GPL-2

License flags

SPDX valid, OSI approved

History

Versions

18

First release

2017-10-30

Latest release

2026-04-28

Avg cadence

182 days

Cold removal rate

Dep drift

0

LOC over versions

v3.6: 345 LOCv3.7: 345 LOCv3.8: 345 LOCv3.9: 345 LOCv3.10: 345 LOCv3.11: 345 LOCv3.12: 345 LOCv3.13: 345 LOCv3.14: 345 LOCv3.15: 345 LOCv3.16: 345 LOCv3.17: 345 LOCv3.18: 345 LOCv3.19: 345 LOCv3.20: 345 LOCv3.21: 345 LOCv3.22: 345 LOCv3.23: 345 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

People

Lichy Han

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