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MethCP

Bioc removed

Differential methylation anlsysis for bisulfite sequencing data

v1.14.0 · Artistic-2.0
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Release Lineage

Entered 3.10 · Oct 30, 2019

Removed after 3.17 · Apr 26, 2023

1.0 In 8 of 49 releases 3.23

Description

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

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Topics

Software › BiologicalQuestion › DifferentialMethylation
Software › Technology › Sequencing
Software › Technology › Sequencing › WholeGenome
Software › StatisticalMethod › TimeCourse

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