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Linnorm

Bioc current

Linear model and normality based normalization and transformation method (Linnorm)

v2.36.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

Linnorm is an algorithm for normalizing and transforming RNA-seq, single cell RNA-seq, ChIP-seq count data or any large scale count data. It has been independently reviewed by Tian et al. on Nature Methods (https://doi.org/10.1038/s41592-019-0425-8). Linnorm can work with raw count, CPM, RPKM, FPKM and TPM.

Code & tests

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Technology › Sequencing
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › RNASeq
Software › BiologicalQuestion › DifferentialExpression
Software › AssayDomain › GeneExpression
Software › ResearchField › Genetics
Software › WorkflowStep › Normalization
Software
Software › AssayDomain › Transcription
Software › WorkflowStep › BatchEffect
Software › BiologicalQuestion › PeakDetection
Software › StatisticalMethod › Clustering
Software › WorkflowStep › Visualization › Network
Software › Technology › SingleCell

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Bioconductor (1)

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