CAMPP2

Bioc removed

CAncer bioMarker Prediction Pipeline 2 (CAMPP2)

v0.99.0 · GPL (>= 3)

Release Lineage

Release history unavailable.

Description

The CAncer bioMarker Prediction Pipeline2 (CAMPP2) is a simple bioinformatics tool intended to automatize identification of potential diagnostic and prognostic cancer biomarkers. The pipeline is versatile and may be used for analysis of a variety of quantitative biological data from high throughput platforms, including genes, proteins, small RNAs, lipids and glycans. CAMPP2 currently supports: replacing missing values, data normalization, batch correction, distributional check, dimensionality reduction, clustering, differential expression/abundance analysis, LASSO/Elastic Net regression, random forest, and visualisations

Code & tests

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Code

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Topics

Software › AssayDomain › GeneExpression

Software › BiologicalQuestion › DifferentialExpression

Software › WorkflowStep › Annotation

Software › StatisticalMethod › Clustering

Software › WorkflowStep › QualityControl

Software › Technology › Sequencing › RNASeq

Software › ResearchField › Metabolomics

Software › ResearchField › SystemsBiology

Software

Software › AssayDomain › Transcription

Software › WorkflowStep › Normalization

Software › StatisticalMethod › PrincipalComponent

Software › ResearchField › Lipidomics

Software › WorkflowStep › Visualization

Software › StatisticalMethod › Regression