Mikhail Dozmorov

12 Bioconductor packages On Bioconductor since Oct 2017 (8 years) · last active 1 year ago

Bioconductor Packages

12 packages

Package	Title	Category	Version
CTCF Bioc	Genomic coordinates of CTCF binding sites, with orientation	annotation	0.99.14
HiCcompare Bioc	HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets	software	1.34.0
SpectralTAD Bioc	SpectralTAD: Hierarchical TAD detection using spectral clustering	software	1.28.0
TADCompare Bioc	TADCompare: Identification and characterization of differential TADs	software	1.22.0
denyranges Bioc removed	Genomic coordinates of problematic genomic regions		0.99.1
excluderanges Bioc	Genomic coordinates of problematic genomic regions	annotation	0.99.11
multiHiCcompare Bioc	Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available	software	1.30.0
nullranges Bioc	Generation of null ranges via bootstrapping or covariate matching	software	1.18.0
nullrangesData Bioc	ExperimentHub datasets for the nullranges package	experiment	1.18.0
preciseTAD Bioc	preciseTAD: A machine learning framework for precise TAD boundary prediction	software	1.22.0
preciseTADhub Bioc	Pre-trained random forest models obtained using preciseTAD	experiment	1.20.0
scHiCcompare Bioc	Differential Analysis of Single-cell Hi-C Data	software	1.4.0