zetadiv
Functions to Compute Compositional Turnover Using Zeta Diversity
v1.3.0
·
May 28, 2025
·
GPL-3
Description
Functions to compute compositional turnover using zeta-diversity, the number of species shared by multiple assemblages. The package includes functions to compute zeta-diversity for a specific number of assemblages and to compute zeta-diversity for a range of numbers of assemblages. It also includes functions to explain how zeta-diversity varies with distance and with differences in environmental variables between assemblages, using generalised linear models, linear models with negative constraints, generalised additive models,shape constrained additive models, and I-splines.
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| Flavor | Status |
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| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
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r-devel-linux-x86_64-debian-clang
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r-devel-linux-x86_64-debian-gcc
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r-devel-linux-x86_64-fedora-clang
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r-devel-linux-x86_64-fedora-gcc
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r-devel-macos-arm64
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OK
r-devel-windows-x86_64
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NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
| ^
ERROR
r-oldrel-windows-x86_64
examples
Running examples in 'zetadiv-Ex.R' failed The error most likely occurred in: > ### Name: Zeta.order.ex > ### Title: Expectation of zeta diversity for a specific number of > ### assemblages or sites > ### Aliases: Zeta.order.ex > > ### ** Examples > > > utils::data(bird.spec.coarse) > data.spec.bird <- bird.spec.coarse[,3:193] > > zeta.bird <- Zeta.order.ex(data.spec.bird, order = 3) > zeta.bird $zeta.order [1] 3 $combinations [1] 302621 $zeta.val [1] 57.61204 $zeta.val.sd [1] 13.10351 > > ########## > s Error: object 's' not found Execution halted
OK
r-patched-linux-x86_64
*
OK
r-release-linux-x86_64
*
OK
r-release-macos-arm64
*
OK
r-release-macos-x86_64
*
OK
r-release-windows-x86_64
*
Check History
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
|
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
|
ERROR
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) glm.cons.Rd:54: Lost braces; missing escapes or markup?
54 | \item{method}{the method used in fitting the model. The default method "\code{glm.fit.cons}" uses function {nnnpls} from package nnls instead of \code{lm.fit} to impose the sign of the coefficients. As in \code{glm}, the alternative method "\code{model.frame}" returns the model frame and does no fitting.}
|
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Version History
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1.3.0
Mar 9, 2026