wrMisc

2.1.1

Analyze Experimental High-Throughput (Omics) Data

3packages depend

17Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Wolfgang RaffelsbergerFirst published 2019-11-0443 releasesCRAN page ↗

The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc. Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values. Other functions help aligning a matrix or data.frame to a reference using partial matching or to mine an experimental setup to extract patterns of replicate samples. Many times large experimental datasets need some additional filtering, adequate functions are provided. Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too. Batch reading (or writing) of sets of files and combining data to arrays is supported, too.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("wrMisc", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wrmisc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wrMisc

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wrMisc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.0 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-08
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 1 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 99%
Return-value docs: 99%
References docs: 0%

Downloads

17K

CRAN downloads in the past year

Rank #3,026 · ~47/day · ~1.4K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.4K30 days

4.8K90 days

17K1 year

Compare downloads with other packages →

Also on299 r2u39 autocran370 conda_forge42 c2d4u

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.0

Imports (5)

grDevicesgraphicsMASSstatsutils

LinkingTo (0)

none

Suggests (23)

BBmiscbootcoin data.table data.tree fdrtool flexclust knitr limma markdown mixdist NbClust preprocessCore qvalue Rcpp RColorBrewer readxl rmarkdown som stringi VGAM vsn wrGraph

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

wrGraph wrProteo wrTopDownFrag

Code & Tests

Code Composition

R 16,356 (51%)Rd 12,917 (41%)Vignettes 2,540 (8%)

Code characteristics

Cyclomatic complexity: 10.0 median / 113 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

281 281 exported

Complexity

17.6 avg / 113 max

Call network

281 nodes / 457 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Wolfgang Raffelsberger

Author, Maintainer

Authors (1)

Wolfgang Raffelsberger

Author, Maintainer

Package Timeline

43 releases. Pick two to compare their code metrics. R releases are shown for context.

2.1.1Latest
2026-07-20 · current release · diff ↗
2.1.0
2026-06-09 · diff ↗
2.0.2
2026-04-29 · diff ↗
R
R 4.6.0 released · 2026-04-24
2.0.0
2026-03-09 · diff ↗
1.15.4
2025-06-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.15.3.1
2025-04-01 · diff ↗
1.15.2
2024-08-20 · diff ↗
1.15.1
2024-07-22 · diff ↗
1.15.0.3
2024-05-10 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.14.2
2024-02-28 · diff ↗
1.14.1
2024-02-14 · diff ↗
1.14.0
2023-11-17 · diff ↗
1.13.0
2023-08-10 · diff ↗

Show 35 earlier events

R
R 4.3.0 released · 2023-04-21
1.12.0
2023-03-20 · diff ↗
1.11.1
2023-01-25 · diff ↗
1.11.0
2023-01-06 · diff ↗
1.10.2
2022-11-02 · diff ↗
1.10.1
2022-10-17 · diff ↗
1.10.0
2022-10-03 · diff ↗
1.9.2
2022-07-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.9.1
2022-04-13 · diff ↗
1.9.0
2022-03-25 · diff ↗
1.8.1
2022-01-24 · diff ↗
1.8.0
2021-12-14 · diff ↗
1.7.0
2021-10-28 · diff ↗
1.6.2
2021-09-16 · diff ↗
1.6.1
2021-08-11 · diff ↗
1.6.0
2021-06-04 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.5.4
2021-03-31 · diff ↗
1.5.3
2021-02-26 · diff ↗
1.5.2
2021-02-09 · diff ↗
1.5.1
2021-01-13 · diff ↗
1.5.0
2020-12-07 · diff ↗
1.4.2
2020-11-20 · diff ↗
1.4.1
2020-11-13 · diff ↗
1.4.0
2020-10-15 · diff ↗
1.3.1
2020-09-18 · diff ↗
1.3.0
2020-07-24 · diff ↗
1.2.4
2020-07-03 · diff ↗
1.2.3
2020-06-16 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.2.0
2020-04-23 · diff ↗
1.1.0
2019-12-09 · diff ↗
1.0.4
2019-11-04
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-11-04
Total releases: 43 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.1.0
Download size: 764 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

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