wikiprofiler

0.1.6

'WikiPathway' Based Data Integration and Visualization

0packages depend

6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Guangchuang YuFirst published 2023-09-064 releasesCRAN page ↗GitHub ↗

Queries online 'WikiPathway' graphics and allows mapping user data (e.g., expression values) on the graph. The package designs a grammar of graphic syntax that using pipe operator to add graphic layer.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("wikiprofiler", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("YuLab-SMU/wikiprofiler")

Development version from YuLab-SMU/wikiprofiler. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wikiprofiler

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wikiprofiler

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wikiprofiler

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 3 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 83%
References docs: 0%

Downloads

CRAN downloads in the past year

Rank #7,502 · ~16/day · ~498/mo

Releases R versions

Daily download trend is not available in this view yet.

28430 days

1.4K90 days

6K1 year

Compare downloads with other packages →

Also on93 r2u5 autocran

Repository

GitHub ↗ yulab-smu/wikiprofiler

6Stars

4Forks

0Open issues

1Open PRs

0Releases

95Commits

4Contributors

95 commits · Last activity 2025-04-30 · 0% stars, 30d

Stars over time

2024-07-06 · 52026-07-07 · 6

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/yulab-smu/wikiprofiler on 2026-07-19.

Reproducibility and dev environment (1)

Makefile

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (7)

ggplot2 ggplotifygrDevicesgridgson rsvg yulab.utils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 322 (66%)Rd 169 (34%)

Code characteristics

Object systems

S33

Cyclomatic complexity: 1.0 median / 15 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

16 5 exported

Complexity

2.6 avg / 15 max

Call network

16 nodes / 10 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Maintainer (1)

Guangchuang Yu

Author, Maintainer, Copyright holder

Authors (2)

Guangchuang Yu

Author, Maintainer, Copyright holder

Yihao Chen

Author

Guangchuang Yu

Author, Maintainer, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.6Latest
2025-05-03 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.5
2024-08-26 · diff ↗
unarchivedReturned to CRAN
2024-08-26
archivedRemoved from CRAN
2024-07-16
policy violation On Internet access
R
R 4.4.0 released · 2024-04-24
0.1.3
2023-09-28 · diff ↗
0.1.2
2023-09-06
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-09-06
Total releases: 4 / 3 yrs
License: Artistic-2.0 OSI
Download size: 6.6 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →