visPedigree
Tidying and Visualizing Animal Pedigrees
Description
Built on graph theory and the high-performance 'data.table' framework, this package provides a comprehensive suite of tools for tidying, analyzing, and visualizing animal pedigrees. By modeling pedigrees as directed acyclic graphs using 'igraph', it ensures robust loop detection, efficient generation assignment, and optimal sub-population splitting. Key features include standardizing pedigree formats, flexible ancestry tracing, and generating legible vector-based PDF graphs. A unique compaction algorithm enables the visualization of massive pedigrees by grouping full-sib families. Furthermore, the package implements high-performance C++ algorithms for calculating and visualizing genetic relationship matrices (A, D, AA, and their inverses) and inbreeding coefficients.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (14 non-OK)
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installed package size
installed size is 9.5Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 2.1Mb
installed package size
installed size is 9.5Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 2.1Mb
installed package size
installed size is 8.6Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 1.2Mb
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Check History
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
installed package size
installed size is 9.5Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 2.1Mb
installed package size
installed size is 9.5Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 2.1Mb
installed package size
installed size is 8.6Mb
sub-directories of 1Mb or more:
doc 6.5Mb
libs 1.2Mb