CRAN requires the check problems on this package to be fixed before 2026-08-21 or it will be archived.

viewpoly

1.0.2

A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

0packages depend

2.6Kdownloads / year

37.0%test coverage

9/13checks pass

Overview

About

Maintained by Cristiane TanigutiFirst published 2021-12-167 releasesCRAN page ↗GitHub ↗

Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("viewpoly", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Breeding-Insight/viewpoly")

Development version from Breeding-Insight/viewpoly. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-viewpoly

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-viewpoly

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

4ERROR9OK

Failing flavors

ERROR r-devel-linux-x86_64-debian-clang
ERROR r-devel-linux-x86_64-debian-gcc
ERROR r-patched-linux-x86_64
ERROR r-release-linux-x86_64

Slowest check: 3.5 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.04

37.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-07-12
9 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-06-09
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 866 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 100%
Return-value docs: 0%
References docs: 10%

Downloads

2.6K

CRAN downloads in the past year

Rank #15,122 · ~7/day · ~214/mo

Releases R versions

Daily download trend is not available in this view yet.

25930 days

71890 days

2.6K1 year

Compare downloads with other packages →

Also on157 r2u17 autocran

Repository

GitHub ↗ breeding-insight/viewpoly

0Stars

0Forks

0Open issues

0Open PRs

1Releases

349Commits

6Contributors

License GPL-3.0 · 349 commits · Last activity 2026-07-16

Commits over time

2026-07-12 · 3422026-07-19 · 349

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/breeding-insight/viewpoly on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

Dockerfile

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

26 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (22)

shiny shinyjs shinyWidgets config golem JBrowseR dplyr tidyr DT ggplot2 ggpubr plotly vroom abind reshape2statsutilshttr curl hidecan purrr bs4Dash

LinkingTo (0)

none

Suggests (6)

testthat rlang pkgload vdiffr markdown shinytest

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (11)

Maintainer (1)

Cristiane Taniguti

Author, Maintainer

Authors (5)

Cristiane Taniguti

Author, Maintainer

Olivia Angelin-Bonnet

Author · added in 0.4.1

Jeekin Lau

Author

Marcelo Mollinari

Author

Gabriel de Siqueira Gesteira

Author · added in 0.3.1

Contributors (5)

David Byrne

Contributor

Oscar Riera-Lizarazu

Contributor · added in 0.1.1

Susan Thomson

Contributor · added in 0.4.1

Zhao-Bang Zeng

Contributor

Guilherme da Silva Pereira

Contributor · added in 0.3.1

University of Florida Breeding Insight

Listed in earlier versions (3)

Gabriel Gesteira

no longer listed · 0.1.0 to 0.2.0

Guilherme Pereira

no longer listed · 0.1.0 to 0.2.0

Oscar Riera-Lizarau

no longer listed · 0.1.0

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.2Latest
2026-07-11 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.4.1
2024-03-28 · diff ↗
R
R 4.3.0 released · 2023-04-21
0.3.2
2022-11-01 · diff ↗
0.3.1
2022-10-11 · diff ↗
0.2.0
2022-06-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.1.1
2022-01-03 · diff ↗
0.1.0
2021-12-16
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-12-16
Total releases: 7 / 5 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1.0
Download size: 3.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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