shorm

0.2.1

Detect the Shape of Dose-Response Curves

0packages depend

1.1Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Eric BairFirst published 2026-04-292 releasesCRAN page ↗GitHub ↗

Provides functions for hormesis screening by classifying the shapes of dose-response curves based on semiparametric tests. The shapes are indications of different potential toxicology effect. It also offers a scalable visualization scheme to present testing conclusions for large-scale dataset with a large number of dose-response curves. For more information, see Jin et al. (2026) https://github.com/YinglJin-0203/shorm/blob/main/Manuscripts/BotanicalHormesisTestingFinalDraft.docx.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("shorm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("YinglJin-0203/shorm")

Development version from YinglJin-0203/shorm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-shorm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-shorm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-shorm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.0 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-06-08
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-30
7 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 110 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 78%
Return-value docs: 100%
References docs: 0%

Downloads

1.1K

CRAN downloads in the past year

Rank #10,132 · ~3/day · ~88/mo

Releases R versions

Daily download trend is not available in this view yet.

15530 days

1K90 days

1.1K1 year

Compare downloads with other packages →

Also on30 r2u

Repository

GitHub ↗ yingljin-0203/shorm

0Stars

1Forks

0Open issues

1Open PRs

0Releases

45Commits

4Contributors

45 commits · Last activity 2026-05-26

Forks over time

2026-02-26 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/yingljin-0203/shorm on 2026-07-31.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

SRMERS ggplot2 scales dplyr

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Eric Bair

Author, Maintainer

Authors (2)

Eric Bair

Author, Maintainer

Ying Jin

Author, Copyright holder

Ying Jin

Author, Copyright holder

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.2.1Latest
2026-06-05 · current release · diff ↗
0.1.3
2026-04-29
R
R 4.6.0 released · 2026-04-24

Package metadata

First published: 2026-04-29
Total releases: 2 / 1 yrs
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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