shinyCox

1.1.3

Create 'shiny' Applications for Cox Proportional Hazards Models

0packages depend

2.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Harrison ClementFirst published 2023-08-235 releasesCRAN page ↗GitHub ↗

Takes one or more fitted Cox proportional hazards models and writes a 'shiny' application to a directory specified by the user. The 'shiny' application displays predicted survival curves based on user input, and contains none of the original data used to create the Cox model or models. The goal is towards visualization and presentation of predicted survival curves.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("shinyCox", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("harryc598/shinyCox")

Development version from harryc598/shinyCox. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-shinycox

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-shinyCox

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-shinyCox

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 2.1 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-10
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-08
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-07
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 263 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.2K

CRAN downloads in the past year

Rank #18,787 · ~6/day · ~185/mo

Releases R versions

Daily download trend is not available in this view yet.

20130 days

59890 days

2.2K1 year

Compare downloads with other packages →

Also on102 r2u

Repository

GitHub ↗ harryc598/shinycox

1Stars

0Forks

0Open issues

0Open PRs

0Releases

133Commits

2Contributors

License LGPL-3.0 · 133 commits · Last activity 2025-02-01

Stars over time

2023-08-30 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/harryc598/shinycox on 2026-07-30.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (2)

shinysurvival

LinkingTo (0)

none

Suggests (4)

DT knitr rmarkdown shinydashboard

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Harrison Clement

Author, Maintainer

Authors (3)

Harrison Clement

Author, Maintainer

Stanley Pounds

Author

Subodh Selukar

Author

Funders (1)

St Jude Children's Research Hospital

Funder

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.3Latest
2025-02-01 · current release · diff ↗
1.1.2
2024-12-08 · diff ↗
1.1.1
2024-10-06 · diff ↗
1.1.0
2024-05-30 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.1
2023-08-23
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-08-23
Total releases: 5 / 3 yrs
License: LGPL (>= 3) OSI
Download size: 27 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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