romic

1.3.3

R for High-Dimensional Molecular Data

0packages depend

2.9Kdownloads / year

51.5%test coverage

13/13checks pass

Overview

About

Maintained by Sean HackettFirst published 2021-07-204 releasesCRAN page ↗GitHub ↗

Represents high-dimensional data as tables of features, samples and measurements, and a design list for tracking the meaning of individual variables. Using this format, filtering, normalization, and other transformations of a dataset can be carried out in a flexible manner. 'romic' takes advantage of these transformations to create interactive 'shiny' apps for exploratory data analysis such as an interactive heatmap.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("romic", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("shackett/romic")

Development version from shackett/romic. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-romic

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-romic

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.2 min · r-oldrel-macos-x86_64

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

2.9K

CRAN downloads in the past year

Rank #13,735 · ~8/day · ~242/mo

romic Releases R versions

Daily download trend is not available in this view yet.

22430 days

77290 days

2.9K1 year

Compare downloads with other packages →

Also on100 r2u36 autocran

Repository

GitHub ↗ shackett/romic

1Stars

0Forks

1Open issues

1Open PRs

0Releases

186Commits

3Contributors

186 commits · Last activity 2026-01-31

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/shackett/romic on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (13)

checkmate cli dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr

LinkingTo (0)

none

Suggests (6)

knitr impute lazyeval rmarkdown usethis testthat (>= 3.0.0)

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Sean Hackett

Author, Maintainer

Authors (1)

Sean Hackett

Author, Maintainer

Calico Life Sciences LLC

Funders (1)

Calico Life Sciences LLC

Package Timeline

4 releases. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.3.3Latest
2026-01-31 · current release · diff ↗
unarchivedReturned to CRAN
2026-01-31
archivedRemoved from CRAN
2025-12-03
email to the maintainer is undeliverable
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.1.3
2023-09-21 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.1.1
2023-02-02 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.0.0
2021-07-20
removedRemoved from CRAN
2021-05-18
policy violation Detritus in '/tmp' Back on CRAN on 2021-07-20
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2021-07-20
Total releases: 4 / 5 yrs
License: MIT + file LICENSE OSI
Download size: 660 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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