revert
Reversion Mutation Detector for DNA Sequencing Data
Description
Reversion mutations are secondary mutations that reverse the deleterious effects of an original pathogenic mutation, partially or fully restoring the gene's function. The revert package detects reversion mutations for a specific pathogenic mutation from DNA-seq bam files.
Downloads
225
Last 30 days
21893rd
523
Last 90 days
1.8K
Last year
Trend: +54.1% (30d vs prior 30d)
0
Last 30 days
33
Last 90 days
116
Last year
Trend: -100% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | ERROR |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.
Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jul 1, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 30, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 29, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 27, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 20, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 19, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 17, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 13, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 12, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 27, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 22, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE May 17, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/revert.Rcheck/00install.out' for details.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 11, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.7/revert.Rcheck/00install.out' for details.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026
package dependencies
Packages required but not available: 'BSgenome', 'ensembldb' Packages suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75', 'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 30, 2026
ERROR 12 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
package dependencies
Packages suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75', 'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86'
package dependencies
Package required but not available: ‘pwalign’ Packages suggested but not available for checking: 'BSgenome.Hsapiens.UCSC.hg19', 'EnsDb.Hsapiens.v75', 'BSgenome.Hsapiens.UCSC.hg38', 'EnsDb.Hsapiens.v86' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
4,094
Files
50
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
1
Internal functions
26
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.4.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2023-11-23
Latest release
2025-12-17
Avg cadence
755 days
Cold removal rate
–
Dep drift
8
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.