respR

2.3.4

Import, Process, Analyse, and Calculate Rates from Respirometry Data

0packages depend

5.9Kdownloads / year

1.5%test coverage

13/13checks pass

Overview

About

Maintained by Nicholas CareyFirst published 2022-02-1610 releasesCRAN page ↗GitHub ↗

Provides a structural, reproducible workflow for the processing and analysis of respirometry data. It contains analytical functions and utilities for working with oxygen time-series to determine respiration or oxygen production rates, and to make it easier to report and share analyses. See Harianto et al. 2019 doi:10.1111/2041-210X.13162.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("respR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("januarharianto/respr")

Development version from januarharianto/respr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-respr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-respR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-respR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.14

1.5%

Coverage · measured lines

96%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-08
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 1 FAILURE
WARNING2026-06-07
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 477 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 54%
Documented parameters: 100%
Return-value docs: 100%
References docs: 1%

Downloads

5.9K

CRAN downloads in the past year

Rank #10,732 · ~16/day · ~492/mo

Releases R versions

Daily download trend is not available in this view yet.

28730 days

96890 days

5.9K1 year

Compare downloads with other packages →

Also on141 r2u41 autocran

Repository

GitHub ↗ januarharianto/respr

12Stars

2Forks

6Open issues

0Open PRs

20Releases

1,849Commits

6Contributors

rrstudiorespirometry

1,849 commits · Last activity 2026-07-14

Stars over time

2025-01-15 · 122026-07-07 · 12

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/januarharianto/respr on 2026-07-30.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Research and citation (1)

CITATION.cff

Governance and community (1)

Funding

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.3

Imports (15)

data.table dplyr gluegraphicsgrDeviceslubridate magrittr marelac purrr roll segmentedstatsstringrutilsxml2

LinkingTo (0)

none

Suggests (3)

respirometry testthat covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Maintainer (1)

Nicholas Carey

Author, Maintainer

Authors (2)

Nicholas Carey

Author, Maintainer

Januar Harianto

Author

Package Timeline

10 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.3.4Latest
2025-10-10 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.3.3
2024-05-10 · diff ↗
unarchivedReturned to CRAN
2024-05-10
archivedRemoved from CRAN
2024-04-26
issues were not corrected in time Repeatedly fails with timeouts on clang-using platforms
R
R 4.4.0 released · 2024-04-24
2.3.2
2023-11-16 · diff ↗
2.3.1
2023-06-29 · diff ↗
unarchivedReturned to CRAN
2023-06-29
archivedRemoved from CRAN
2023-06-19
issues were not corrected in time
2.3.0
2023-06-05 · diff ↗
R
R 4.3.0 released · 2023-04-21
2.2.0
2023-01-06 · diff ↗
2.1.0
2022-12-08 · diff ↗
R
R 4.2.0 released · 2022-04-22

Show 6 earlier events

2.0.2
2022-03-23 · diff ↗
unarchivedReturned to CRAN
2022-03-23
archivedRemoved from CRAN
2022-03-23
policy violation Sending HTML to a team member (only), unable to understand the 'failure: length > 1 in coercion to logical' issue in donttest checks
2.0.1
2022-03-14 · diff ↗
2.0.0
2022-02-16
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-16
Total releases: 10 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.3
Bundled data: 1.2 MB / 12 files
Download size: 1.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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