rYWAASB

0.4.1

Simultaneous Selection by Trait and WAASB Index

0packages depend

5.1Kdownloads / year

–test coverage

10/13checks pass

Overview

About

Maintained by Ali ArminianFirst published 2024-08-285 releasesCRAN page ↗GitHub ↗

This tool proposes a new ranking algorithm that utilizes a "Y*WAASB" biplot generated by the 'metan'. The aim of the current package is to effectively distinguish the top-ranked genotypes in MET (Multi-Environmental Trials). For a detailed explanation of the process of obtaining "WAASB", "WAASBY" indices, and a "Y*WAASB" biplot, refer to the manual included in this package as well as the study by Olivoto & Lúcio (2020) doi:10.1111/2041-210X.13384. In this context, "WAASB" refers to the "Weighted Average of Absolute Scores" provided by Olivoto et al. (2019) doi:10.2134/agronj2019.03.0220, which quantifies the stability of genotypes across different environments using linear mixed-effect models. To run the package, you need to extract the "WAASB" and "WAASBY" coefficients using the 'metan' and apply them. This tool utilizes PCA (Principal Component Analysis) and differentiates the entries which may be genotypes, hybrids, varieties, etc using "WAASB", "WAASBY", and a combination of the specified trait and WAASB index.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("rYWAASB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("abeyran/rYWAASB")

Development version from abeyran/rYWAASB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-rywaasb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-rYWAASB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-rYWAASB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

3NOTE10OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 3.8 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-06-09
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-05-08
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-07
10 OK · 2 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 130 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 100%
Return-value docs: 100%
References docs: 56%

Downloads

5.1K

CRAN downloads in the past year

Rank #17,238 · ~14/day · ~427/mo

Releases R versions

Daily download trend is not available in this view yet.

24830 days

63090 days

5.1K1 year

Compare downloads with other packages →

Also on95 r2u

Repository

GitHub ↗ abeyran/rywaasb

0Stars

1Forks

0Open issues

3Open PRs

0Releases

22Commits

1Contributors

License GPL-3.0 · 22 commits · Last activity 2026-07-17

Forks over time

2025-02-17 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

Checks run against github.com/abeyran/rywaasb on 2026-07-30.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (5)

ggplot2graphicsfactoextra FactoMineR mathjaxr

LinkingTo (0)

none

Suggests (9)

car metan devtools usethis testthat knitr rmarkdown roxygen2 spelling

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Ali Arminian

Author, Maintainer, Copyright holder

Authors (1)

Ali Arminian

Author, Maintainer, Copyright holder

Ali Arminian

Author, Maintainer, Copyright holder

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

0.4.1Latest
2026-07-12 · current release · diff ↗
0.4
2026-06-10 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.3
2025-05-23 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2
2024-09-30 · diff ↗
0.1
2024-08-28
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-08-28
Total releases: 5 / 2 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5
Bundled data: 5.0 KB / 3 files
Download size: 308 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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