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rCISSVAE

Clustering-Informed Shared-Structure VAE for Imputation

v0.0.5 · Mar 3, 2026 · MIT + file LICENSE

Description

Implements the Clustering-Informed Shared-Structure Variational Autoencoder ('CISS-VAE'), a deep learning framework for missing data imputation introduced in Khadem Charvadeh et al. (2025) <doi:10.1002/sim.70335>. The model accommodates all three types of missing data mechanisms: Missing Completely At Random (MCAR), Missing At Random (MAR), and Missing Not At Random (MNAR). While it is particularly well-suited to MNAR scenarios, where missingness patterns carry informative signals, 'CISS-VAE' also functions effectively under MAR assumptions.

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CRAN Check Status

1 ERROR
13 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (14 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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OK r-oldrel-macos-arm64

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OK r-oldrel-macos-x86_64

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ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'binary_variables_tutorial.rmd' using rmarkdown
--- finished re-building 'binary_variables_tutorial.rmd'

--- re-building 'do_not_impute_matrix.rmd' using rmarkdown
--- finished re-building 'do_not_impute_matrix.rmd'

--- re-building 'impute_with_saved_model.rmd' using rmarkdown
--- finished re-building 'impute_with_saved_model.rmd'

--- re-building 'optunadb.rmd' using rmarkdown
--- finished re-building 'optunadb.rmd'

--- re-building 'summary_functions.rmd' using rmarkdown
--- finished re-building 'summary_functions.rmd'

--- re-building 'vignette.rmd' using rmarkdown
File test_plot_arch.png not found in resource path
Error: processing vignette 'vignette.rmd' failed with diagnostics:
pandoc document conversion failed with error 99
--- failed re-building 'vignette.rmd'

--- re-building 'virtual_environment_tutorial.rmd' using rmarkdown
--- finished re-building 'virtual_environment_tutorial.rmd'

SUMMARY: processing the following file failed:
  'vignette.rmd'

Error: Vignette re-building failed.
Execution halted
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 9, 2026
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'binary_variables_tutorial.rmd' using rmarkdown
--- finished re-building 'binary_variables_tutorial.rmd'

--- re-building 'do_not_impute_matrix.rmd' using rmarkdown
--- finished re-building 'do_not_impute_matrix.rmd'

--- re-building 'impute_with_saved_model.rmd' using rmarkdown
--- finished re-building 'impute_with_saved_model.rmd'

--- re-building 'optunadb.rmd' using rmarkdown
--- finished re-building 'optunadb.rmd'

--- re-building 'summary_

Dependency Network

Dependencies Reverse dependencies reticulate purrr gtsummary rlang ComplexHeatmap rCISSVAE

Version History

new 0.0.5 Mar 10, 2026