qsub

1.1.3

Running Commands Remotely on 'Gridengine' Clusters

0packages depend

3.3Kdownloads / year

9.5%test coverage

11/13checks pass

Overview

About

Maintained by Robrecht CannoodtFirst published 2018-07-305 releasesCRAN page ↗GitHub ↗

Run lapply() calls in parallel by submitting them to 'gridengine' clusters using the 'qsub' command.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)

install.packages("qsub", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rcannood/qsub")

Development version from rcannood/qsub. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qsub

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-qsub

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.4 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.22

9.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 894 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 100%
Return-value docs: 13%
References docs: 0%

Downloads

3.3K

CRAN downloads in the past year

Rank #13,038 · ~9/day · ~273/mo

Releases R versions

Daily download trend is not available in this view yet.

24630 days

82590 days

3.3K1 year

Compare downloads with other packages →

Also on89 r2u73 c2d4u

Repository

GitHub ↗ rcannood/qsub

9Stars

3Forks

0Open issues

1Open PRs

3Releases

275Commits

2Contributors

275 commits · Last activity 2023-09-26

Stars over time

2023-09-26 · 92026-07-07 · 9

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/rcannood/qsub on 2026-07-19.

Continuous integration (2)

Travis CIAppVeyor

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0

Imports (13)

dplyr gluemethodspbapply processx purrr random readr ssh stringr tidyrtoolsutils

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,636 (68%)Rd 765 (32%)

Code characteristics

Cyclomatic complexity: 3.0 median / 20 max
Test cases: 12 / 0.22 per code line

Test coverage

Line coverage

Expression

12.6%

Tests / Examples

9.5% / 0% ex

Functions

36 24 exported

Complexity

4.1 avg / 20 max

Call network

36 nodes / 65 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

36 functions

Function	Cyclo	Coverage
cat_remote exp	4	0%
cp_remote exp	9	0%
file_exists_remote exp	2	0%
is_job_running exp	2	0%
ls_remote exp	2	0%
mkdir_remote exp	4	0%

People & History

People (2)

Maintainer (1)

Robrecht Cannoodt

Author, Maintainer

Authors (2)

Robrecht Cannoodt

Author, Maintainer

Wouter Saelens

Author

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1.3Latest
2021-09-23 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
1.1.2
2021-05-12 · diff ↗
1.1.1
2021-01-29 · diff ↗
unarchivedReturned to CRAN
2021-01-29
archivedRemoved from CRAN
2021-01-29
policy violation Unconditionally creates ~/.local/share/qsub/
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.1.0
2019-02-13 · diff ↗
1.0.3
2018-07-30
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-07-30
Total releases: 5 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.0
Download size: 25 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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High-Performance and Parallel Computing with R

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