R Observatory: Metrics for publipha version 0.1.2

Balamuta, James Joseph

publipha

0.1.2

Bayesian Meta-Analysis with Publications Bias and P-Hacking

0packages depend

2.8Kdownloads / year

83.2%test coverage

0/13checks pass

Overview

About

Maintained by Jonas MossFirst published 2020-01-083 releasesCRAN page ↗

Tools for Bayesian estimation of meta-analysis models that account for publications bias or p-hacking. For publication bias, this package implements a variant of the p-value based selection model of Hedges (1992) doi:10.1214/ss/1177011364 with discrete selection probabilities. It also implements the mixture of truncated normals model for p-hacking described in Moss and De Bin (2019) arXiv:1911.12445.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("publipha", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-publipha

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-publipha

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-publipha

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Slowest check: 11.9 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.28

83.2%

Coverage · measured lines

100%

Documentation · exports

6

Dependencies · direct

Check history

NOTE2026-07-29
0 OK · 13 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-27
0 OK · 12 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-22
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
0 OK · 13 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 263 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 71%
Documented parameters: 81%
Return-value docs: 100%
References docs: 58%

Downloads

2.8K

CRAN downloads in the past year

Rank #11,552 · ~8/day · ~234/mo

Releases R versions

Daily download trend is not available in this view yet.

32330 days

85490 days

2.8K1 year

Compare downloads with other packages →

Also on405 r2u6 autocran48 c2d4u

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.6.0methodsRcpp

Imports (4)

rstan rstantools loo truncnorm

LinkingTo (6)

BH Rcpp RcppEigen (>= 0.3.3.4.0)rstan StanHeaders RcppParallel

Suggests (7)

testthat covr knitr rmarkdown metafor spelling metadat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jonas Moss

Author, Maintainer

Authors (1)

Jonas Moss

Author, Maintainer

Copyright holders (1)

Trustees of Columbia University

Copyright holder

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.2Latest
2023-04-04 · current release · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.1.1
2020-01-15 · diff ↗
0.1.0
2020-01-08
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-01-08
Total releases: 3 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.6.0
Bundled data: 42 KB / 5 files
Download size: 111 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Meta-Analysis

Cite

Cite this package

Start here. This is the citation for the package itself.

citation("publipha")

CRAN DOI

https://doi.org/10.32614/CRAN.package.publipha

BibTeX, derived from DESCRIPTION

@Manual{publipha,
  title  = {publipha: Bayesian Meta-Analysis with Publications Bias and P-Hacking},
  author = {Moss, Jonas and Trustees of Columbia University},
  year   = {2023},
  note   = {R package version 0.1.2},
  doi    = {10.32614/CRAN.package.publipha},
  url    = {https://CRAN.R-project.org/package=publipha}
}

Derived from the package DESCRIPTION, not from a citation file the authors wrote. If they publish one later, prefer it.

This is the citation for the package. It is not a citation for the R Observatory.

Cite this page

Use this when the claim is about a measurement on this page.

BibTeX

@misc{robservatorypublipha,
  author    = {Balamuta, James Joseph},
  title     = {{R} {Observatory}: Metrics for {publipha} version 0.1.2},
  year      = {2026},
  publisher = {HJJB, LLC},
  url       = {https://r-observatory.thecoatlessprofessor.com/packages/publipha},
  note      = {Data set. Data release v2026-08-05}
}

APA

Balamuta, J. J. (2026). R Observatory: Metrics for publipha version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/packages/publipha

RIS

TY  - DATA
AU  - Balamuta, James Joseph
TI  - R Observatory: Metrics for publipha version 0.1.2
PY  - 2026
PB  - HJJB, LLC
N1  - Data release v2026-08-05
UR  - https://r-observatory.thecoatlessprofessor.com/packages/publipha
ER  -

In prose

These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/packages/publipha.

Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.

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