protti

Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

v1.0.0 · Jan 13, 2026 · MIT + file LICENSE

Description

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	267.4s
r-devel-linux-x86_64-debian-gcc	OK	162.7s
r-devel-linux-x86_64-fedora-clang	OK	403.2s
r-devel-linux-x86_64-fedora-gcc	OK	441.7s
r-devel-macos-arm64	OK	62s
r-devel-windows-x86_64	OK	264s
r-oldrel-macos-arm64	NOTE	69s
r-oldrel-macos-x86_64	OK	248s
r-oldrel-windows-x86_64	OK	360s
r-patched-linux-x86_64	OK	249.8s
r-release-linux-x86_64	OK	249.3s
r-release-macos-arm64	OK	62s
r-release-macos-x86_64	OK	226s
r-release-windows-x86_64	OK	256s

Check details (14 non-OK)

OK r-devel-linux-x86_64-debian-clang

OK r-devel-linux-x86_64-debian-gcc

OK r-devel-linux-x86_64-fedora-clang

OK r-devel-linux-x86_64-fedora-gcc

OK r-devel-macos-arm64

OK r-devel-windows-x86_64

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘STRINGdb’

OK r-oldrel-macos-x86_64

OK r-oldrel-windows-x86_64

OK r-patched-linux-x86_64

OK r-release-linux-x86_64

OK r-release-macos-arm64

OK r-release-macos-x86_64

OK r-release-windows-x86_64

Check History

NOTE 13 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-oldrel-macos-arm64

package dependencies

Package suggested but not available for checking: ‘STRINGdb’

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Version History

new 1.0.0 Mar 9, 2026