prototest

Inference on Prototypes from Clusters of Features

v1.2 · Feb 3, 2019 · GPL (>= 2)

Description

Procedures for testing for group-wide signal in clusters of variables. Tests can be performed for single groups in isolation (univariate) or multiple groups together (multivariate). Specific tests include the exact and approximate (un)selective likelihood ratio tests described in Reid et al (2015), the selective F test and marginal screening prototype test of Reid and Tibshirani (2015). User may pre-specify columns to be included in prototype formation, or allow the function to select them itself. A mixture of these two is also possible. Any variable selection is accounted for using the selective inference framework. Options for non-sampling and hit-and-run null reference distributions.

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CRAN Check Status

14 NOTE

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	147.2s
r-devel-linux-x86_64-debian-gcc	NOTE	98.2s
r-devel-linux-x86_64-fedora-clang	NOTE	216.1s
r-devel-linux-x86_64-fedora-gcc	NOTE	241.4s
r-devel-macos-arm64	NOTE	26s
r-devel-windows-x86_64	NOTE	175s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	78s
r-oldrel-windows-x86_64	NOTE	204s
r-patched-linux-x86_64	NOTE	133.9s
r-release-linux-x86_64	NOTE	129.1s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	104s
r-release-windows-x86_64	NOTE	170s

Check details (18 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-linux-x86_64-fedora-clang

compiled code

File ‘prototest/libs/prototest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-linux-x86_64-fedora-gcc

compiled code

File ‘prototest/libs/prototest.so’:
  Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

It is good practice to register native routines and to disable symbol
search.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Stephen Reid <sreid1652@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Stephen",
                    family = "Reid",
                    role = c("aut", "cre"),
                    email = "sreid1652@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) prototest.univariate.Rd:21: Lost braces
    21 | response variable. Vector of length emph{n}, assumed to be quantitative.
       |                                         ^

Dependency Network

Version History

new 1.2 Mar 9, 2026