R Observatory: Metrics for profrep version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

profrep

1.0.0

Profile Repeatability

0packages depend

1.8Kdownloads / year

90.5%test coverage

13/13checks pass

Overview

About

Maintained by Ursula K. BeattieFirst published 2023-12-041 releasesCRAN page ↗GitHub ↗

Calculates profile repeatability for replicate stress response curves, or similar time-series data. Profile repeatability is an individual repeatability metric that uses the variances at each timepoint, the maximum variance, the number of crossings (lines that cross over each other), and the number of replicates to compute the repeatability score. For more information see Reed et al. (2019) doi:10.1016/j.ygcen.2018.09.015.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("profrep", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ubeattie/profrep")

Development version from ubeattie/profrep. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-profrep

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-profrep

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-profrep

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.0 min · r-release-windows-x86_64

Code health

Yes

Tests · ratio 0.36

90.5%

Coverage · measured lines

100%

Documentation · exports

1

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 457 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.8K

CRAN downloads in the past year

Rank #23,510 · ~5/day · ~153/mo

Releases R versions

Daily download trend is not available in this view yet.

9430 days

40790 days

1.8K1 year

Compare downloads with other packages →

Also on96 r2u8 autocran

Repository

GitHub ↗ ubeattie/profrep

0Stars

0Forks

1Open issues

0Open PRs

3Releases

86Commits

3Contributors

86 commits · Last activity 2023-12-05

Releases over time

2023-11-30 · 32026-07-07 · 3

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/ubeattie/profrep on 2026-08-03.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (1)

stats

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Ursula K. Beattie

Maintainer, Author, Copyright holder

Authors (5)

Ursula K. Beattie

Maintainer, Author, Copyright holder

David Harris

Author, Copyright holder

J. Michael Reed

Author, Copyright holder

L. Michael Romero

Author, Copyright holder

Zachary R. Weaver

Author, Copyright holder

Copyright holders (5)

Ursula K. Beattie

Maintainer, Author, Copyright holder

David Harris

Author, Copyright holder

J. Michael Reed

Author, Copyright holder

L. Michael Romero

Author, Copyright holder

Zachary R. Weaver

Author, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2023-12-04
Total releases: 1 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 2.10
Bundled data: 3.3 KB / 3 files
Download size: 48 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("profrep")

Format

Beattie, U. K., Harris, D., Reed, J. M., Romero, L. M., & Weaver, Z. R. (2023). profrep: Profile Repeatability (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.profrep

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for profrep version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-08. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-08, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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