prevalence

0.4.1

Tools for Prevalence Assessment Studies

0packages depend

5.6Kdownloads / year

–test coverage

0/13checks pass

Overview

About

Maintained by Brecht DevleesschauwerFirst published 2013-07-065 releasesCRAN page ↗GitHub ↗

The prevalence package provides Frequentist and Bayesian methods for prevalence assessment studies. IMPORTANT: the truePrev functions in the prevalence package call on JAGS (Just Another Gibbs Sampler), which therefore has to be available on the user's system. JAGS can be downloaded from <https://mcmc-jags.sourceforge.io/>.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("prevalence")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

pak::pak("brechtdv/prevalence")

Development version from brechtdv/prevalence. Requires the pak package.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-prevalence

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-prevalence

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-prevalence

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13NOTE

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-devel-windows-x86_64
NOTE r-oldrel-macos-arm64
NOTE r-oldrel-macos-x86_64
NOTE r-oldrel-windows-x86_64
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64
NOTE r-release-macos-arm64
NOTE r-release-macos-x86_64
NOTE r-release-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

Yes

README

Dependencies · direct

Check history

NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

5.6K

CRAN downloads in the past year

Rank #10,076 · ~15/day · ~465/mo

38030 days

1.1K90 days

5.6K1 year

Also on102 r2u10 autocran19 c2d4u

Source & community

GitHub ↗

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0.0

Imports (7)

methods baseutils basestats basegraphics basegrDevices basecoda rjags

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code

3,991Lines of code

10Exported functions

Code & tests

Open call graph →

Line coverage

–

Expression

–

Tests / Examples

–

Functions

48 10 exported

Complexity

6.6 avg / 64 max

Call network

48 nodes / 58 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (10)

Maintainer (1)

Brecht Devleesschauwer

Author, Maintainer

Authors (9)

Author

Author

Author

Author

Author

Author

Author

Author

Author

Release timeline

5 releases. Pick two to compare their code metrics; R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.4.1Latest
2022-06-03 · current release
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
0.4.0
2015-04-20 · diff ↗
R
R 3.2.0 released · 2015-04-16
0.3.0
2014-10-21 · diff ↗
R
R 3.1.0 released · 2014-04-10

Show 2 earlier events

0.2.0
2013-09-22 · diff ↗
0.1.0
2013-07-06

Package metadata

First published: 2013-07-06
Total releases: 5 / 13 yrs
License: GPL (>= 2) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet