precmed

1.1.0

Precision Medicine

0packages depend

2.5Kdownloads / year

0.0%test coverage

12/13checks pass

Overview

About

Maintained by Thomas DebrayFirst published 2022-10-122 releasesCRAN page ↗GitHub ↗

A doubly robust precision medicine approach to fit, cross-validate and visualize prediction models for the conditional average treatment effect (CATE). It implements doubly robust estimation and semiparametric modeling approach of treatment-covariate interactions as proposed by Yadlowsky et al. (2020) doi:10.1080/01621459.2020.1772080.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("precmed", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("smartdata-analysis-and-statistics/precmed")

Development version from smartdata-analysis-and-statistics/precmed. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-precmed

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-precmed

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-precmed

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 4.3 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.01

0.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 733 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 97%
Return-value docs: 100%
References docs: 20%

Downloads

2.5K

CRAN downloads in the past year

Rank #17,647 · ~7/day · ~205/mo

Releases R versions

Daily download trend is not available in this view yet.

19030 days

61890 days

2.5K1 year

Compare downloads with other packages →

Also on100 r2u2 autocran

Repository

GitHub ↗ smartdata-analysis-and-statistics/precmed

6Stars

1Forks

10Open issues

0Open PRs

3Releases

150Commits

7Contributors

precision-medicinecranrr-package

License Apache-2.0 · 150 commits · Last activity 2025-07-03 · 0% stars, 30d

Stars over time

2025-07-13 · 52026-07-07 · 6

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/smartdata-analysis-and-statistics/precmed on 2026-07-31.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (13)

dplyr gbm gam ggplot2 glmnetgraphicsMASSmgcvrlang stringr tidyrsurvivalrandomForestSRC

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (7)

Maintainer (1)

Thomas Debray

Contributor, Maintainer

Authors (3)

Xiaotong Jiang

Author

Gabrielle Simoneau

Author

Lu Tian

Author

Contributors (3)

Thomas Debray

Contributor, Maintainer

Joana Caldas

Contributor

Stan Wijn

Contributor

Biogen MA Inc.

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.0Latest
2024-10-05 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0.0
2022-10-12
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-10-12
Total releases: 2 / 4 yrs
License: Apache License (== 2.0)
Minimum R: ≥ 3.5.0
Bundled data: 229 KB / 3 files
Download size: 573 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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