popkin

Estimate Kinship and FST under Arbitrary Population Structure

v1.3.23 · Jan 6, 2023 · GPL-3

Description

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.

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CRAN Check Status

2 NOTE

11 OK

Show all 13 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	49.6s
r-devel-linux-x86_64-debian-gcc	NOTE	37.3s
r-devel-linux-x86_64-fedora-clang	OK	76.4s
r-devel-linux-x86_64-fedora-gcc	OK	109.2s
r-devel-windows-x86_64	OK	71s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	54s
r-oldrel-windows-x86_64	OK	82s
r-patched-linux-x86_64	OK	44.8s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	19s
r-release-macos-x86_64	OK	86s
r-release-windows-x86_64	OK	72s

Check details (2 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Check History

NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE Jun 8, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

WARNING r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Reverse Dependencies (4)

suggests

bnpsd ggmix simfam simtrait

Dependency Network

Version History

11 tracked

new 1.3.23 Mar 10, 2026

updated 1.3.23 ← 1.3.17 diff Jan 6, 2023

updated 1.3.17 ← 1.3.13 diff Jan 26, 2022

updated 1.3.13 ← 1.3.8 diff Jul 26, 2021

updated 1.3.8 ← 1.3.7 diff Feb 10, 2021

updated 1.3.7 ← 1.3.0 diff Feb 8, 2021

updated 1.3.0 ← 1.2.2 diff Dec 17, 2019

updated 1.2.2 ← 1.1.2 diff May 12, 2019

updated 1.1.2 ← 1.0.5 diff Feb 13, 2019

updated 1.0.5 ← 1.0.4 diff Jan 25, 2018

new 1.0.4 Jan 14, 2018