polySegratioMM

0.6-5

Bayesian Mixture Models for Marker Dosage in Autopolyploids

0packages depend

2.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Peter BakerFirst published 2009-11-177 releasesCRAN page ↗GitHub ↗

Fits Bayesian mixture models to estimate marker dosage for dominant markers in autopolyploids using JAGS (1.0 or greater) as outlined in Baker et al "Bayesian estimation of marker dosage in sugarcane and other autopolyploids" (2010, doi:10.1007/s00122-010-1283-z). May be used in conjunction with polySegratio for simulation studies and comparison with standard methods.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("polySegratioMM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("petebaker/polysegratiomm")

Development version from petebaker/polysegratiomm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-polysegratiomm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-polySegratioMM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.9 min · r-release-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 72 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 83%
Return-value docs: 100%
References docs: 22%

Downloads

2.7K

CRAN downloads in the past year

Rank #14,767 · ~7/day · ~223/mo

Releases R versions

Daily download trend is not available in this view yet.

26030 days

72190 days

2.7K1 year

Compare downloads with other packages →

Also on105 r2u34 autocran

Repository

GitHub ↗ petebaker/polysegratiomm

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-02-27

Repository practices

Upstream repositoryBeta

Checks run against github.com/petebaker/polysegratiomm on 2026-07-26.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (2)

R >= 2.10polySegratio

Imports (3)

gtools codalattice

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown bookdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Peter Baker

Author, Maintainer

Authors (1)

Peter Baker

Author, Maintainer

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.6-5Latest
2026-02-25 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.6-4
2018-03-23 · diff ↗
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
0.6-3
2014-03-06 · diff ↗

Show 11 earlier events

R
R 3.0.0 released · 2013-04-03
0.6-2
2012-04-10 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
0.6-1
2011-04-13 · diff ↗
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
0.5-2
2009-11-18 · diff ↗
0.5-1
2009-11-17
R
R 2.10.0 released · 2009-10-26

Package metadata

First published: 2009-11-17
Total releases: 7 / 17 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 225 KB / 3 files
Download size: 1.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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