phecodemap

0.1.0

Visualization for PheCode Mapping with ICD-9 and ICD-10-CM Codes

0packages depend

2.7Kdownloads / year

3.9%test coverage

13/13checks pass

Overview

About

Maintained by PARSE LTDFirst published 2022-01-151 releasesCRAN page ↗GitHub ↗

To build a shiny app for visualization of the hierarchy of PheCode Mapping with International Classification of Diseases (ICD). The same PheCode hierarchy is displayed in two ways: as a sunburst plot and as a tree.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("phecodemap", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("celehs/phecodemap")

Development version from celehs/phecodemap. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-phecodemap

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-phecodemap

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-phecodemap

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.6 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 181.19

3.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 222 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #15,409 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

22730 days

73090 days

2.7K1 year

Compare downloads with other packages →

Also on144 r2u33 autocran

Repository

GitHub ↗ celehs/phecodemap

4Stars

1Forks

0Open issues

0Open PRs

2Releases

51Commits

2Contributors

License GPL-3.0 · 51 commits · Last activity 2024-04-23 · +33.3% stars, 30d

Stars over time

2026-07-14 · 32026-07-18 · 4

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/celehs/phecodemap on 2026-07-19.

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.5.0shiny shinyBS

Imports (12)

collapsibleTree config dplyr DT golem (>= 0.3.1)plotly purrr readr rintrojs shinycssloaders shinydashboard shinydashboardPlus

LinkingTo (0)

none

Suggests (4)

rmarkdown knitr shinytest testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

PARSE LTD

Maintainer, Author

Authors (1)

PARSE LTD

Maintainer, Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2022-01-15
Total releases: 1 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 917 KB / 1 file
Download size: 3.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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