permPATH

1.3

Permutation Based Gene Expression Pathway Analysis

0packages depend

8.6Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Ivo D. ShterevFirst published 2016-02-1712 releasesCRAN page ↗

Can be used to carry out permutation based gene expression pathway analysis. This work was supported by a National Institute of Allergy and Infectious Disease/National Institutes of Health contract (No. HHSN272200900059C).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("permPATH")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-permpath

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-permPATH

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-permPATH

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13OK

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Yes

Vignettes

README

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-06-08
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

8.6K

CRAN downloads in the past year

Rank #4,752 · ~24/day · ~718/mo

permPATH Releases R versions

Daily download trend is not available in this view yet.

70730 days

2.1K90 days

8.6K1 year

Compare downloads with other packages →

Also on401 r2u14 autocran17 c2d4u

Source & community

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.4.0R2HTML xtable

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

knitr

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 1,551 (50%)Other 696 (23%)Vignettes 284 (9%)Rd 229 (7%)C 201 (7%)R 111 (4%)

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

32 0 exported

Complexity

6 avg / 11 max

Call network

32 nodes / 16 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (4)

Maintainer (1)

Ivo D. Shterev

Author, Maintainer

Authors (3)

Ivo D. Shterev

Author, Maintainer

Kouros Owzar

Author

Gregory D. Sempowski

Author

Contributors (1)

Kenneth Wilder

Contributor, Copyright holder

Kenneth Wilder

Contributor, Copyright holder

Release timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.3Latest
2023-09-05 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.2
2021-02-10 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.1
2017-06-09 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.0
2016-09-20 · diff ↗
0.9
2016-07-18 · diff ↗
0.8
2016-07-13 · diff ↗

Show 8 earlier events

0.7.1
2016-07-10 · diff ↗
0.7
2016-07-06 · diff ↗
0.6
2016-05-18 · diff ↗
R
R 3.3.0 released · 2016-05-03
0.5
2016-02-23 · diff ↗
0.2
2016-02-18 · diff ↗
0.1
2016-02-17
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2016-02-17
Total releases: 12 / 10 yrs
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet